FATHOM(1) | User Commands | FATHOM(1) |
NAME¶
fathom - sequence and annotation toolSYNOPSIS¶
fathom < ann> <dna> <commands>OPTIONS¶
- -help
- report useful information
-validate [-quiet]
-gene-stats [-errors-ok -nucleotide
-dinucleotide]
-categorize <int>
-export <int> [-plus -errors-ok]
-extract <feature> -length <int>
-offset <int>
-exon-intron
-split <-number <int> | -training
<float> | -GC <float> | -repeat
<float>>
-ace-format <-gene-method <string> [-dna
-extra <string>]>
-compare-genes <predictions> [-details]
-score-genes <hmm> [-errors-ok]
-filter-genes <hmm> -min-score <float>
-min-length <int>
October 2013 | fathom 2010-07-28 |