NAME¶
chainsaw - Cut a gene tree based on a reconciliation
SYNOPSIS¶
chainsaw [
OPTIONS]
reconciled-gene-tree
species-tree
DESCRIPTION¶
reconciled-gene-tree is the filename of the file containing trees in
PRIME format. Notice that the node id is optional and if left out all
species nodeswill be used recursively.
species-tree is the species tree
OPTIONS¶
- --help
- Display help (this text).
- -V, --version
- Print version and exit
- -g, --guest-tree-format primeOrHybrid|inputxml
- The input format. Default is primeOrHybrid
- -h, --host-tree-format primeOrHybrid|inputxml
- The input format of the host tree. Default is primeOrHybrid
- -x, --node-name=STRING
- A named species node to cut at
- -i, --node-id=INT
- The numerical id of a species node to cut at
EXIT STATUS¶
- 0
- Successful program execution.
- 1
- Some error occurred
URL¶
- The prime-phylo home page: http://prime.sbc.su.se
-
SEE ALSO¶
primeDTLSR(1),
primeDLRS(1),
primeGEM(1),
showtree(1),
reconcile(1),
reroot(1),
tree2leafnames(1),
treesize(1)