clm close(1) | USER COMMANDS | clm close(1) |
NAME¶
clm_close - Fetch connected components from graphs or subgraphs clmclose is not in actual fact a program. This manual page documents the behaviour and options of the clm program when invoked in mode close. The options -h, --apropos, --version, -set, --nop are accessible in all clm modes. They are described in the clm manual page.
SYNOPSIS¶
clm close -imx <fname> [options] clm close -imx fname (specify matrix input) -abc fname ( specify label input) -dom fname (input domain/cluster file) [-o fname (output file)] [--is-undirected ( trust input graph to be undirected)] [--write-count (output component count)] [--write-sizes ( output component sizes (default))] [--write-cc ( output components as clustering)] [--write-block ( output graph restricted to -dom argument)] [--write-blockc (output graph complement of -dom argument) ] [-cc-bound num (select components with size at least num) ] [-tf spec (apply tf-spec to input matrix) ] [-h (print synopsis, exit)] [--apropos ( print synopsis, exit)] [--version (print version, exit)]
DESCRIPTION¶
Use clm close to fetch the connected components from a graph. Different output modes are supported (see below). In matrix mode (i.e. using the -imx option) the output returned with --write-cc can be used in conjunction with mcxsubs to retrieve individual subgraphs corresponding to connected components.
OPTIONS¶
-abc <fname> (label input)
-imx <fname> (input matrix)
-o fname (output file)
-dom fname (input domain/cluster file)
--write-count (output component count)
--write-sizes (output component sizes (default))
--write-cc (output components as clustering)
--write-block (output graph restricted to -dom argument)
--write-blockc (output graph complement of -dom argument)
--is-undirected (omit graph undirected check)
-cc-bound num (select components with size at least num)
AUTHOR¶
Stijn van Dongen.
SEE ALSO¶
mclfamily(7) for an overview of all the documentation and the utilities in the mcl family.
16 May 2014 | clm close 14-137 |