NAME¶
Bio::Tools::AlignFactory - Base object for alignment factories
SYNOPSIS¶
You wont be using this as an object, but using a dervied class like
Bio::Tools::pSW
DESCRIPTION¶
Holds common Alignment Factory attributes in place
http://bio.perl.org/ or birney@sanger.ac.uk
APPENDIX¶
The rest of the documentation details each of the object methods. Internal
methods are usually preceded with a _
kbyte¶
Title : kbyte()
Usage : set/gets the amount of memory able to be used
Function :
: $factory->kbyte(200);
:
Returns :
Argument : memory in kilobytes
report¶
Title : report()
Usage : set/gets the report boolean to issue reports or not
Function :
: $factory->report(1); # reporting goes on
:
Returns : n/a
Argument : 1 or 0
set_memory_and_report¶
Title : set_memory_and_report
Usage : Only used by subclasses.
Function:
Example :
Returns :
Args :