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GT-REPFIND(1) GenomeTools Manual GT-REPFIND(1)

NAME

gt-repfind - Compute maximal repeats.

SYNOPSIS

gt repfind [options] -ii indexname

DESCRIPTION

-l [value]
Specify minimum length of repeats (default: 20)
-f [yes|no]
Compute maximal forward repeats (default: yes)
-r [yes|no]
Compute maximal reverse matches (default: no)
-scan [yes|no]
scan index rather than mapping it to main memory (default: no)
-ii [string]
Specify input index (default: undefined)
-v [yes|no]
be verbose (default: no)
-help
display help and exit
-version
display version information and exit

REPORTING BUGS

Report bugs to <kurtz@zbh.uni-hamburg.de>.
09/05/2014 GenomeTools 1.5.3