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FASTAQ_SEARCH_FOR_SEQ(1) | Fastaq executables | FASTAQ_SEARCH_FOR_SEQ(1) |
NAME¶
fastaq_search_for_seqDESCRIPTION¶
fastaq_search_for_seq [options] <fasta/q in> <outfile> <search_string> Searches for an exact match on a given string and its reverese complement, in every sequences of a fasta/q file. Case insensitive. Guaranteed to find all hits
positional arguments:¶
- infile
- Name of input fasta/q file
- outfile
- Name of outputfile. Tab-delimited output: sequence name, position, strand
- search_string
- String to search for in the sequences
optional arguments:¶
- -h, --help
- show this help message and exit
AUTHOR¶
fastaq_search_for_seq was originally written by Martin Hunt (mh12@sanger.ac.uk)COPYING¶
Wellcome Trust Sanger Institute Copyright © 2013 Wellcome Trust Sanger Institute This program is free software; you can redistribute it and/or modify it under the terms of the GNU General Public License as published by the Free Software Foundation; either version 3 of the License, or (at your option) any later version.October 2014 | Fastaq |