PLOTCON(1e) | EMBOSS Manual for Debian | PLOTCON(1e) |
NAME¶
plotcon - Plot conservation of a sequence alignmentSYNOPSIS¶
plotcon -sequences seqset
[-scorefile matrix]
-winsize integer
-graph xygraph
plotcon -help
DESCRIPTION¶
plotcon is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Multiple" command group(s).OPTIONS¶
Input section¶
-sequences seqsetFile containing a sequence alignment
-scorefile matrix
This is the scoring matrix file used when comparing
sequences. By default it is the file 'EBLOSUM62' (for proteins) or the file
'EDNAFULL' (for nucleic sequences). These files are found in the 'data'
directory of the EMBOSS installation.
Required section¶
-winsize integerNumber of columns to average alignment quality over. The
larger this value is, the smoother the plot will be. Default value: 4
Output section¶
-graph xygraphBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
plotcon is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |