EDAMISFORMAT(1e) | EMBOSS Manual for Debian | EDAMISFORMAT(1e) |
NAME¶
edamisformat - Find EDAM ontology terms by is_format_of relationSYNOPSIS¶
edamisformat
-identifier string [
-namespace list]
-sensitive boolean
-subclasses boolean
-obsolete boolean
-edamisformat outobo
edamisformat -help
DESCRIPTION¶
edamisformat is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Ontology:EDAM,Data retrieval:Ontology data" command group(s).OPTIONS¶
Input section¶
-identifier stringAdditional section¶
-namespace listBy default all terms are returned. Searches can be
limited to one or a few namespaces. Default value: *
Advanced section¶
-sensitive booleanBy default, the query keywords are matched against the
EDAM term names (and synonyms) only. This option also matches the keywords
against the EDAM term definitions and will therefore (typically) report more
matches. Default value: N
-subclasses boolean
Extend the query matches to include all terms which are
specialisations (EDAM sub-classes) of the matched type. Default value: N
-obsolete boolean
The default behaviour is to not use or return obsolete
terms. This option if set will include all terms. Default value: N
Output section¶
-edamisformat outoboBUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).SEE ALSO¶
edamisformat is fully documented via the tfm(1) system.AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>Wrote the script used to autogenerate this manual
page.
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.05/11/2012 | EMBOSS 6.4.0 |