NAME¶
gmod_sort_gff3.pl - Sorts a GFF3 file to put lines with Parent tags after their
parent.
SYNOPSIS¶
% gmod_sort_gff3.pl --infile <gff file name>
COMMAND-LINE OPTIONS¶
--infile Name of the input gff3 file (required)
--outfile Name of the output gff3 file
(default: sorted.gff)
DESCRIPTION¶
This is a very simple (and only lightly tested) script for sorting gff3 files so
that all lines that have Parent tags come after the line that contains the
parent ID tag. Files thusly sorted are required for the GMOD chado bulk
loader, gmod_bulk_load_gff3.pl.
AUTHORS¶
Scott Cain <cain@cshl.org>
Copyright (c) 2006
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself.