NAME¶
$O - Convert FASTA to simple GFF3
SYNOPSYS¶
% $O [options]
COMMAND-LINE OPTIONS¶
--fasta_dir Directory contain fasta files
(default: ./fasta)
--gfffilename Name of GFF3 file to be created
(default: ./out.gff)
--type SO type to assign to each feature
(default: EST)
--source Text to appear in source column
(default: .)
--attributes Additional tag=value pairs to appear in column 9
--nosequence Suppress the ##FASTA section (ie, don't
print DNA sequences)
DESCRIPTION¶
This script simply takes a collection of fasta files and converts them to simple
GFF3 suitable for loading into chado.
AUTHORS¶
Scott Cain <cain@cshl.org>
Copyright (c) 2006
This library is free software; you can redistribute it and/or modify it under
the same terms as Perl itself.