NAME¶

copymat - convert ASCII matrices into a database suitable for quick reading

SYNOPSIS¶

copymat [ -] [ -H] [ -P filename] [ -W N] [ -f X] [ -r F]

DESCRIPTION¶

copymat converts ASCII matrices produced by makemat(1) into a database that can be read into memory quickly.

OPTIONS¶

A summary of options is included below.

-

Print usage message

-H

Print help; overrides all other arguments

-P filename

Database for matrix profiles (default = stdin)

-W N

Word size for RPS database (default = 3)

-f X

Threshold for extending hits for RPS database (default = 11.0)

-r F

Do not create RPS mem map file(s)

AUTHOR¶

The National Center for Biotechnology Information.

SEE ALSO¶

impala(1), makemat(1), /usr/share/doc/blast2/impala.html