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BP_SEARCH2BSML(1p) | User Contributed Perl Documentation | BP_SEARCH2BSML(1p) |
NAME¶
search2bsml - Turn SearchIO parseable reports(s) into a BSML reportSYNOPSIS¶
Usage:search2bsml [-o outputfile] [-f reportformat] [-i inputfilename] OR file1 file2 ..
DESCRIPTION¶
This script will turn a protein Search report (BLASTP, FASTP, SSEARCH, AXT, WABA, SIM4) into a BSML File. The options are:-i infilename - (optional) inputfilename, will read either ARGV files or from STDIN -o filename - the output filename [default STDOUT] -f format - search result format (blast, fasta,waba,axt) (ssearch is fasta format). default is blast. -h - this help menuAdditionally specify the filenames you want to process on the command-line. If no files are specified then STDIN input is assumed. You specify this by doing: search2gff < file1 file2 file3
AUTHOR¶
Jason Stajich, jason-at-bioperl-dot-org2014-07-13 | perl v5.18.2 |