| FORGE(1) | User Commands | FORGE(1) |
NAME¶
forge - training program for SNAP
SYNOPSIS¶
forge [options] <ann> <dna> [options]
OPTIONS¶
-help
-verbose
- -pseudocount <float>
- [1] (absolute number for all models)
-pseudoCoding <float> [0.0] (eg. 0.05)
-pseudoIntron <float> [0.0]
- -pseudoInter <float>
- [0.0]
- -min-counts
- [0]
-lcmask [-fragmentN]
- -utr5-length <int>
- [50]
- -utr5-offset <int>
- [10]
- -utr3-length <int>
- [50]
- -utr3-offset <int>
- [10]
- -explicit <int>
- [250]
- -min-intron <int>
- [30]
- -boost <file>
- (file of ID <int>)
| October 2013 | forge 2010-07-28 |