table of contents
PXCONSQ(1) | User Commands | PXCONSQ(1) |
NAME¶
pxconsq - manual page for pxconsq 1.3
SYNOPSIS¶
pxconsq [OPTIONS]...
DESCRIPTION¶
Compute a consensus sequence from an alignment. This will take fasta, phylip, and nexus formats from a file or STDIN. Results are written in fasta format.
OPTIONS¶
- -s, --seqf=FILE
- input sequence file, STDIN otherwise
- -o, --outf=FILE
- output sequence file, STOUT otherwise
- -h, --help
- display this help and exit
- -V, --version
- display version and exit
- -C, --citation
- display phyx citation and exit
CITATION¶
Brown, Joseph W., Joseph F. Walker, and Stephen A. Smith. 2017. Phyx: phylogenetic tools for unix. Bioinformatics 33(12): 1886-1888. https://doi.org/10.1093/bioinformatics/btx063.
AUTHOR¶
Written by Stephen A. Smith (blackrim), Joseph W. Brown
REPORTING BUGS¶
Report bugs to: <https://github.com/FePhyFoFum/phyx/issues> phyx home page: <https://github.com/FePhyFoFum/phyx>
COPYRIGHT¶
Copyright © 2013-2021 FePhyFoFum License GPLv3
July 2021 | pxconsq 1.3 |