.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.36.
.TH VERSION "1" "September 2009" "Version 1.01 (18. August 2009) Revision: 4692" "User Commands"
.SH NAME
Version \- Tree reconstrucion
.SH SYNOPSIS
.B tree_recon
\fI-m <Phylip distance matrix> \fR[\fIOptions\fR]
.SH DESCRIPTION
Tree reconstrucion \- TreeRecon
.TP
\fB\-h\fR, \fB\-\-help\fR
displays this help message
.TP
\fB\-V\fR, \fB\-\-version\fR
print version information
.SS "Main Options:"
.TP
\fB\-m\fR, \fB\-\-matrix\fR <Phylip distance matrix>
file with distance matrix
At least 3 species required.
.TP
\fB\-b\fR, \fB\-\-build\fR [nj, min, max, avg, wavg]
tree building method (default nj)
\fR nj = Neighbor\-joining
\fR min = UPGMA single linkage
\fR max = UPGMA complete linkage
\fR avg = UPGMA average linkage
\fR wavg = UPGMA weighted average linkage
.IP
Neighbor\-joining creates an unrooted tree. We root that tree at the last joined pair.
.TP
\fB\-o\fR, \fB\-\-outfile\fR <Filename>
output filename (default tree.dot)
.TP
\fB\-f\fR, \fB\-\-format\fR [dot | newick]
output format (default dot)
.SH AUTHOR
.br
tree_recon was written by Tobias Rausch.
.PP
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