.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.40.8.
.TH SAINT-SPC-NOCTRL "1" "April 2012" "saint-spc-noctrl " "User Commands"
.SH NAME
saint-spc-noctrl \- run SAINT scoring algorithm for protein-protein interaction data using label free quantitative proteomics data
.SH SYNOPSIS
.B saint-spc-noctrl
.I [interactionFile] [preyFile] [baitFile] [nburnin] [niter] [fthres] [fgroup] [var] [normalize]
.SH DESCRIPTION
.PP
\fB\-burnin\fR and iter: burn\-in period and main iteration of MCMC
.PP
\fB\-fthres\fR: frequency threshold above which probability is set to 0
.PP
\fB\-fgroup\fR: frequency boundary dividing high and low frequency groups
.PP
\fB\-var\fR: binary [0/1] indicator for modeling variance of the count data distributions
.PP
\fB\-normalize\fR: whether to normalize the counts by total spectral counts
.SH "SEE ALSO"
You can download a PDF file with more detailed instructions from
.IP
http://sourceforge.net/projects/saint-apms/files/
.P
which is called saint-vignette-<YYYYMonDD>.pdf.