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.\" ========================================================================
.\"
.IX Title "SWISS::ACs 3pm"
.TH SWISS::ACs 3pm "2006-01-26" "perl v5.10.1" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH "Name"
.IX Header "Name"
SWISS::ACs
.SH "Description"
.IX Header "Description"
\&\fBSWISS::ACs\fR represents the \s-1AC\s0 (accession) lines within an SWISS-PROT + TrEMBL
entry as specified in the user manual
http://www.expasy.org/sprot/userman.html .
.PP
The SWISS-PROT format has recently been changed to multiple \s-1AC\s0 lines.
This module will read
.PP
.Vb 2
\& Ordinary AC lines
\&    AC   P10585;
\&
\& The old temporary format (for internal use only)
\&    AC   Q57333; O08291; O08202; O08292; O08203; O08293; O08204; O08294;
\&    **   O08205; O08295; O08206; O08296; O08207; O08297; O08208; O08298;
\&    **   O08213;
\&
\& and the new format.
\&    AC   Q57333; O08291; O08202; O08292; O08203; O08293; O08204; O08294;
\&    AC   O08205; O08295; O08206; O08296; O08207; O08297; O08208; O08298;
\&    AC   O08213;
.Ve
.PP
But, SWISS::ACs will \s-1DROP\s0 funny ** comment lines that are sometimes
found following an \s-1AC\s0 line:
.PP
.Vb 2
\&    AC   Q48558; P71434;
\&    **   MERGED 2 TREMBL ENTRIES.
.Ve
.PP
This module will always write the new format with multiple \s-1AC\s0 lines.
.SH "Inherits from"
.IX Header "Inherits from"
SWISS::ListBase.pm
.SH "Attributes"
.IX Header "Attributes"
.ie n .IP """list""" 4
.el .IP "\f(CWlist\fR" 4
.IX Item "list"
This is an array containing a list of all the accession numbers associated
with this entry.  The first member will be the primary accession number, and
any following are the secondary accession numbers.
.SH "Methods"
.IX Header "Methods"
.SS "Standard methods"
.IX Subsection "Standard methods"
.IP "new" 4
.IX Item "new"
.PD 0
.IP "fromText" 4
.IX Item "fromText"
.IP "toText" 4
.IX Item "toText"
.IP "sort" 4
.IX Item "sort"
.PD
This method sorts the secondary \s-1AC\s0 numbers alphanumerically, i.e.
all but the first. The primary \s-1AC\s0 number must never be sorted.