.TH "beagle::cpu::EigenDecompositionSquare" 3 "Fri May 25 2012" "Version 1.0.0" "HMSBEAGLE" \" -*- nroff -*-
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.SH NAME
beagle::cpu::EigenDecompositionSquare \- 
.SH SYNOPSIS
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.PP
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Inherits \fBbeagle::cpu::EigenDecomposition< BEAGLE_CPU_EIGEN_GENERIC >\fP\&.
.SS "Public Member Functions"

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.RI "\fBEigenDecompositionSquare\fP (int decompositionCount, int stateCount, int categoryCount, long flags)"
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.RI "virtual void \fBsetEigenDecomposition\fP (int eigenIndex, const double *inEigenVectors, const double *inInverseEigenVectors, const double *inEigenValues)"
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.RI "virtual void \fBupdateTransitionMatrices\fP (int eigenIndex, const int *probabilityIndices, const int *firstDerivativeIndices, const int *secondDerivativeIndices, const double *edgeLengths, const double *categoryRates, REALTYPE **transitionMatrices, int count)"
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.SS "Protected Attributes"

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.RI "REALTYPE ** \fBgEMatrices\fP"
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.RI "REALTYPE ** \fBgIMatrices\fP"
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.RI "bool \fBisComplex\fP"
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.RI "int \fBkEigenValuesSize\fP"
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.SH "Author"
.PP 
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