.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.40.9.
.TH MAF-SWAP.PY "1" "May 2012" "maf-swap.py 199" "User Commands"
.SH NAME
maf-swap.py \- changes the order of the sequences in MAF-format alignments
.SH SYNOPSIS
.B maf-swap.py
[\fIoptions\fR] \fImy-alignments.maf\fR
.SH DESCRIPTION
Change the order of sequences in MAF\-format alignments.
.SH OPTIONS
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-n\fR N
move the Nth sequence to the top (default: 2)