.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.40.9.
.TH MAF-SORT.SH "1" "May 2012" "maf-sort.sh 199" "User Commands"
.SH NAME
maf-sort.sh \- Sort MAF-format alignments by sequence name
.SH SYNOPSIS
.B maf-sort.sh
[\fIoptions\fR] \fImy-alignments.maf\fR
.SH OPTIONS
.TP
\fB\-h\fR
show this help message and exit
.TP
\fB\-d\fR
only print duplicate alignments
.TP
\fB\-n\fR
sort by the n\-th sequence (default: 1)