.TH g_dih 1 "Mon 4 Apr 2011" "" "GROMACS suite, VERSION 4.5.4-dev-20110404-bc5695c"
.SH NAME
g_dih - analyzes dihedral transitions

.B VERSION 4.5.4-dev-20110404-bc5695c
.SH SYNOPSIS
\f3g_dih\fP
.BI "\-f" " traj.xtc "
.BI "\-s" " topol.tpr "
.BI "\-o" " hello.out "
.BI "\-[no]h" ""
.BI "\-[no]version" ""
.BI "\-nice" " int "
.BI "\-b" " time "
.BI "\-e" " time "
.BI "\-dt" " time "
.BI "\-[no]w" ""
.BI "\-[no]sa" ""
.BI "\-mult" " int "
.SH DESCRIPTION
\&\fB g_dih\fR can do two things. The default is to analyze dihedral transitions
\&by merely computing all the dihedral angles defined in your topology
\&for the whole trajectory. When a dihedral flips over to another minimum
\&an angle/time plot is made.


\&The opther option is to discretize the dihedral space into a number of
\&bins, and group each conformation in dihedral space in the
\&appropriate bin. The output is then given as a number of dihedral
\&conformations sorted according to occupancy.
.SH FILES
.BI "\-f" " traj.xtc" 
.B Input
 Trajectory: xtc trr trj gro g96 pdb cpt 

.BI "\-s" " topol.tpr" 
.B Input
 Run input file: tpr tpb tpa 

.BI "\-o" " hello.out" 
.B Output
 Generic output file 

.SH OTHER OPTIONS
.BI "\-[no]h"  "no    "
 Print help info and quit

.BI "\-[no]version"  "no    "
 Print version info and quit

.BI "\-nice"  " int" " 19" 
 Set the nicelevel

.BI "\-b"  " time" " 0     " 
 First frame (ps) to read from trajectory

.BI "\-e"  " time" " 0     " 
 Last frame (ps) to read from trajectory

.BI "\-dt"  " time" " 0     " 
 Only use frame when t MOD dt = first time (ps)

.BI "\-[no]w"  "no    "
 View output \fB .xvg\fR, \fB .xpm\fR, \fB .eps\fR and \fB .pdb\fR files

.BI "\-[no]sa"  "no    "
 Perform cluster analysis in dihedral space instead of analysing dihedral transitions.

.BI "\-mult"  " int" " \-1" 
 mulitiplicity for dihedral angles (by default read from topology)

.SH SEE ALSO
.BR gromacs(7)

More information about \fBGROMACS\fR is available at <\fIhttp://www.gromacs.org/\fR>.