.\" DO NOT MODIFY THIS FILE! It was generated by help2man 1.40.9. .TH ANTSUSELANDMARKIMAGESTOGETAFFINETRANSFORM "1" "May 2012" "ANTSUseLandmarkImagesToGetAffineTransform 1.9" "User Commands" .SH NAME ANTSUseLandmarkImagesToGetAffineTransform \- part of ANTS registration suite .SH SYNOPSIS .B ANTSUseLandmarkImagesToGetAffineTransform \fIFixedImageWithLabeledLandmarks.nii.gz MovingImageWithLabeledLandmarks.nii.gz \fR[\fIrigid | affine\fR] \fIOutAffine.txt\fR .SH DESCRIPTION .TP we expect the input images to be (1) N\-ary (2) in the same physical space as the images you want to .IP register and (3 ) to have the same landmark points defined within them ... landmarks will be defined from the center of mass of the labels in the input images . You can use ITK\-snap to generate the label images.