.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.12.
.TH VCFANNO "1" "July 2020" "vcfanno 0.3.2+ds" "User Commands"
.SH NAME
vcfanno \- annotate a VCF with other VCFs/BEDs/tabixed files
.SH DESCRIPTION
=============================================
vcfanno version 0.3.2 [built with go1.14.4]
.PP
see: https://github.com/brentp/vcfanno
=============================================
Usage of vcfanno:
.HP
\fB\-base\-path\fR string
.IP
optional base\-path to prepend to annotation files in the config
.HP
\fB\-ends\fR
.IP
annotate the start and end as well as the interval itself.
.HP
\fB\-lua\fR string
.IP
optional path to a file containing custom javascript functions to be used as ops
.HP
\fB\-p\fR int
.IP
number of processes to use. (default 2)
.HP
\fB\-permissive\-overlap\fR
.IP
annotate with an overlapping variant even it doesn't share the same ref and alt alleles. Default is to require exact match between variants.
.SH AUTHOR
 This manpage was written by Nilesh Patra for the Debian distribution and
 can be used for any other usage of the program.