.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH SALMON "1" "March 2024" "salmon 1.10.2" "User Commands"
.SH NAME
salmon \- highly-accurate, transcript-level quantification estimates from RNA-seq data
.SH SYNOPSIS
.B salmon
\fI\,-h|--help or\/\fR
.SH DESCRIPTION
salmon v1.10.2
.IP
salmon \fB\-v\fR|\-\-version or
salmon \fB\-c\fR|\-\-cite or
salmon [\-\-no\-version\-check] <COMMAND> [\-h | options]
.SS "Commands:"
.TP
index
: create a salmon index
.TP
quant
: quantify a sample
.TP
alevin
: single cell analysis
.TP
swim
: perform super\-secret operation
.IP
quantmerge : merge multiple quantifications into a single file