.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH RSEM-GFF3-TO-GTF "1" "March 2024" "rsem-gff3-to-gtf 1.3.3+dfsg" "User Commands"
.SH NAME
rsem-gff3-to-gtf \- Convert GFF3 files to GTF files.
.SH DESCRIPTION
usage: rsem\-gff3\-to\-gtf [\-h] [\-\-make\-genes\-as\-transcripts]
.TP
[\-\-RNA\-patterns <patterns>]
[\-\-extract\-sequences <output.fa>]
input_GFF3_file output_GTF_file
.PP
Convert GFF3 files to GTF files.
.SS "positional arguments:"
.TP
input_GFF3_file
Input GFF3 file.
.TP
output_GTF_file
Output GTF file.
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-\-make\-genes\-as\-transcripts\fR
GFF3 file does not contain transcripts, make each gene
as a transcript. (default: False)
.TP
\fB\-\-RNA\-patterns\fR <patterns>
Types of RNAs to be extracted, e.g. mRNA,rRNA
(default: None)
.TP
\fB\-\-extract\-sequences\fR <output.fa>
If GFF3 file contains reference sequences, extract
them to the specified file (default: None)