.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH RNR-PRUNE "1" "October 2021" "rnr-prune 1.0.1" "User Commands"
.SH NAME
rnr-prune \- prunes a list of taxa from a bootstrap tree or a single tree with branch lengths
.SH DESCRIPTION
This is RnR\-prune version 1.0 released by Andre J. Aberer in 2011\-10\-25.
.PP
This program prunes a list of taxa from a bootstrap tree or a single tree with branch lengths (such as a best\-known ML/MP\-tree).
.PP
SYNTAX: rnr\-prune [\-i <bootTrees> | \fB\-t\fR <treeFile>] \fB\-x\fR <excludeFile> \fB\-n\fR <runId> [\-w <workingDir>] [\-h]
.IP
OBLIGATORY:
.PP
\fB\-x\fR <excludeFile>
.IP
A list of taxa (one taxon per line) to prune from either the bootstrap trees or the single best\-known tree.
.PP
\fB\-i\fR <bootTrees>
.IP
A collection of bootstrap trees.
.PP
\fB\-t\fR <treeFile>
.IP
A single tree with branch lengths. Use either this flag or the \fB\-i\fR flag.
.PP
\fB\-n\fR <runId>
.IP
An identifier for this run.
.IP
OPTIONAL:
.PP
\fB\-w\fR <workDir>
.IP
A working directory where output files are created.
.PP
\fB\-h\fR
.IP
This help file.
.SH AUTHOR
This manpage was written by Nilesh Patra for the Debian distribution and can be used for any other usage of the program.