.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.16.
.TH KTIMPORTMETAREP-EC "1" "June 2021" "ktImportMETAREP-EC 2.8" "User Commands"
.SH NAME
ktImportMETAREP-EC \- explore hierarchical metagenomic data with zoomable pie charts
.SH DESCRIPTION
.IP
Creates a Krona chart of abundances of EC (Enzyme Commission) numbers in METAREP data folders. By default, queries with no EC number will be ignored (see \fB\-i\fR).
.IP
.PP
ktImportMETAREP\-EC \e
.IP
[options] \e
metarep_folder_1[,name_1] \e
[metarep_folder_2[,name_2]] \e
\&...
.TP
metarep_folder
Unpacked METAREP data folder. By default, separate datasets will be created for each input (see [\-c]).
.TP
name
A name to show in the list of datasets in the Krona chart (if multiple input files are present and [\-c] is not specified). By default, the basename of the file will be used.
.IP
.TP
[\-o <string>]
Output file name. [Default: 'metarep\-ec.krona.html']
.TP
[\-n <string>]
Name of the highest level. [Default: 'root']
.TP
[\-c]
Combine data from each file, rather than creating separate datasets within the chart.
.TP
[\-i]
Include a wedge for queries with no hits.
.TP
[\-d <integer>]
Maximum depth of wedges to include in the chart.
.TP
[\-u <string>]
URL of Krona resources to use instead of bundling them with the chart (e.g. "http://krona.sourceforge.net"). Reduces size of charts and allows updates, though charts will not work without access to this URL.
.TP
[\-qp <string>]
Url to send query IDs to (instead of listing them) for each wedge. The query IDs will be sent as a comma separated list in the POST variable "queries", with the current dataset index (from 0) in the POST variable
"dataset". The url can include additional variables encoded via GET.
.TP
[\-v]
Verbose.