.\"     Title: PC-PROJECT
.\"    Author: Chuong Do <chuongdo@cs.stanford.edu>
.\" Generator: DocBook XSL Stylesheets v1.73.2 <http://docbook.sf.net/>
.\"      Date: 2007-04-04
.\"    Manual: Probcons Manual
.\"    Source: pc-project 1.12
.\"
.TH "PC\-PROJECT" "1" "2007\-04\-04" "pc-project 1.12" "Probcons Manual"
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.nh
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.SH "NAME"
pc-project - Program to project multiple alignment to pairwise alignments.
.SH "SYNOPSIS"
.HP 11
\fBpc\-project\fR [\fIALIGNMENT\fR] [\-nocompressgaps]
.SH "NOTE"
.PP
pc\-project is named
\fIproject\fR
in the original sources, but has been remamed to avoid collision with other program names\.
.SH "SEE ALSO"
.PP

\fBpc-makegnufile\fR(1),
\fBpc-compare\fR(1),from the probcons\-extra package, and
\fBprobcons\fR(1)
and
\fBprobcons-RNA\fR(1)
from the probcons package\.
.SH "REFERENCE"
.PP
Please cite Do, C\.B\., Mahabhashyam, M\.S\.P\., Brudno, M\., and Batzoglou, S\. 2005\. PROBCONS: Probabilistic Consistency\-based Multiple Sequence Alignment\. Genome Research 15: 330\-340\.
.SH "AUTHORS"
.PP
\fBChuong Do\fR <\&chuongdo@cs\.stanford\.edu\&>
.sp -1n
.IP "" 4
Wrote probcons in collaboration with Michael Brudno in the research group of Serafim Batzoglou, Department of Computer Science, Stanford University\.
.PP
\fBCharles Plessy\fR <\&charles\-debian\-nospam@plessy\.org\&>
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.IP "" 4
Wrote this manpage in DocBook XML for the Debian distribution\.
.SH "COPYRIGHT"
.PP
This program and its manpage are in the public domain\.
.sp