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.TH "OBIPR2" "1" "Jul 27, 2019" " 1.02 13" "OBITools"
.SH NAME
obipr2 \- description of obipr2
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\fI\%obipr2\fP: converts and optionally download the \fI\%PR2 database\fP
into an ecoPCR database. The formated database include the taxonomy as defined by the PR2 authors.
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\fBWARNING:\fP
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Take care that the numeric taxids associated to the sequences are specific 
to this \fBPR2\fP database and not compatible with the NCBI taxids. 
The taxids present in a version of the \fBPR2\fP database are are just valid for 
this version of the database and not compatible with the taxids used in another version
downloaded at an other time.
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\fIExample:\fP
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> obipr2 
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This command downloads and formats the latest version of the PR2 database from
the official 
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\(gaPR2 web site<http://ssu\-rrna.org/pr2/>\(ga_
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.SH OBIPR2 SPECIFIC OPTIONS
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.B \-\-local=<DIRNAME>
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Specify you have already downloaded a copy of the PR2 database located at the following URL
\fI\%http://5.196.17.195/pr2/download/entire_database\fP
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\fIExample:\fP
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> obipr2 \-\-local=PR2Dir
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This format \fBPR2\fP database pre\-downloaded in the \fIPR2Dir\fP directory.
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.SH COMMON OPTIONS
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.B \-h, \-\-help
Shows this help message and exits.
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.B \-\-DEBUG
Sets logging in debug mode.
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.SH AUTHOR
The OBITools Development Team - LECA
.SH COPYRIGHT
2019 - 2015, OBITool Development Team
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