NAME¶

blst2tkns - tokenize XML-formatted magicblast output

SYNOPSIS¶

blst2tkns

DESCRIPTION¶

blst2tkns reads XML-formatted magicblast output from standard input and summarizes details on standard output in a tab-delimited two-column key/value table.

NB: At the time of this writing, magicblast cannot produce suitable XML output itself; instead, you can request ASN.1 output via -outfmt asn and pipe the result through transmute -a2x.

SEE ALSO¶

split-at-intron(1), transmute(1).