.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.47.12.
.TH MINCPIK "1" "July 2020" "mincpik 2.3.00" "User Commands"
.SH NAME
mincpik \- MNI medical image format tools
.SH DESCRIPTION
Option h is ambiguous (help, horizontal)
Usage:
.IP
mincpik [options] <infile>.mnc [<image.type>]
.IP
mincpik generates image files from MINC volumes using the Imagemagick
convert utility. Use \fB\-help\fR or \fB\-man\fR for more information and examples
.SH OPTIONS
.HP
\fB\-v\fR, \fB\-\-verbose\fR
.IP
Be noisy when doing things
.HP
\fB\-\-version\fR
.IP
Print version number and exit
.HP
\-?, \fB\-\-help\fR
.IP
Dump some quick help output
.HP
\fB\-\-man\fR
.IP
Dump a man page
.HP
\fB\-c\fR \fB\-\-clobber\fR
.IP
overwrite the output file if it exists already
.HP
\fB\-f\fR \fB\-\-fake\fR
.IP
do a dry run, (echo cmds only). This is usually used in combination
with \fB\-verbose\fR to echo commands only
.HP
\fB\-\-scale\fR
.IP
scaling factor for resulting image, by default images are output at
twice their original resolution
.HP
\fB\-\-width\fR
.IP
autoscale the resulting image to have a fixed image width (in
pixels)
.HP
\fB\-\-depth\fR
.IP
bitdepth for resulting image 8 or 16 (MSB machines only!)
.HP
\fB\-\-title\fR
.IP
add a title to the resulting image, if just this option is specified
the text used for the title is the name of the input image file.
.HP
\fB\-\-title_text\fR
.IP
use the input string for the title [default: input\-filename]. This
option must be used in conjunction with \fB\-title\fR
.HP
\fB\-\-title_size\fR
.IP
font point size for the title
.HP
\fB\-\-anot_bar\fR
.IP
create an annotated bar to match the image (use height of the output
image)
.IP
Image range and lookup table options:
.HP
\fB\-\-range\fR
.IP
valid range of values for MINC file
.HP
\fB\-\-image_range\fR
.IP
range of image values to use for pixel intensity
.HP
\fB\-\-auto_range\fR
.IP
automatically determine image range using a 5 and 95% PcT.
(histogram)
.HP
\fB\-\-lookup\fR
.IP
arguments to pass to minclookup
.IP
Slicing options:
.HP
\fB\-s\fR \fB\-\-slice\fR
.IP
slice number to get. (note this is in voxel co\-ordinates)
.HP
\fB\-z\fR \fB\-\-axial\fR \fB\-\-transverse\fR
.IP
get an axial/transverse (z) slice
.HP
\fB\-y\fR \fB\-\-coronal\fR
.IP
get a coronal (y) slice
.HP
\fB\-x\fR \fB\-\-sagittal\fR
.IP
get a sagital (x) slice
.IP
Triplanar options:
.HP
\fB\-t\fR \fB\-\-triplanar\fR
.IP
create a triplanar view of the input file
.HP
\fB\-\-tilesize\fR
.IP
pixel size for each image in a triplanar
.HP
\fB\-\-sagittal_offset\fR
.IP
offset the sagittal slice from the centre
.HP
\fB\-\-sagittal_offset_perc\fR
.IP
offset the sagittal slice by a percentage from the centre
.HP
\fB\-\-vertical\fR
.IP
create a vertical triplanar view (Default)
.HP
\fB\-\-horizontal\fR
.IP
create a horizontal triplanar view