.\" Automatically generated by Pandoc 2.14.0.3
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.TH "VCFSITESUMMARIZE" "1" "" "vcfsitesummarize (vcflib)" "vcfsitesummarize (VCF statistics)"
.hy
.SH NAME
.PP
\f[B]vcfsitesummarize\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfsitesummarize\f[R]
.SH DESCRIPTION
.PP
Summarize by site
.SH EXAMPLES
.IP
.nf
\f[C]
Example:

**vcfsitesummarize** samples/sample.vcf

CHROM   POS     ID      REF     QUAL    FILTER  AA      AC      AF      AN      DP      NS      DB      H2
19      111     .       A       9.6     .                                                       0       0
19      112     .       A       10      .                                                       0       0
20      14370   rs6054257       G       29      PASS                    0.5             14      3       1 1
20      17330   .       T       3       q10                     0.017           11      3       0       0
20      1110696 rs6040355       A       67      PASS    T                               10      2       1 0
20      1230237 .       T       47      PASS    T                               13      3       0       0
20      1234567 microsat1       G       50      PASS    G                       6       9       3       0 0
20      1235237 .       T       0       .                                                       0       0
X       10      rsTest  AC      10      PASS


Type: statistics

      
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.