.\" Automatically generated by Pandoc 2.14.0.3
.\"
.TH "VCFSAMPLEDIFF" "1" "" "vcfsamplediff (vcflib)" "vcfsamplediff (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcfsamplediff\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfsamplediff\f[R] options [ \&... ]
.SH DESCRIPTION
.PP
Establish putative somatic variants using reported differences between
germline and somatic samples.
Tags each record where the listed sample genotypes differ with .
The first sample is assumed to be germline, the second somatic.
Each record is tagged with ={germline,somatic,loh} to specify the type
of variant given the genotype difference between the two samples.
.SH OPTIONS
.IP
.nf
\f[C]

options:
    -s --strict     Require that no observations in the germline support the somatic alternate.


Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.