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.TH "VCFANNOTATEGENOTYPES" "1" "" "vcfannotategenotypes (vcflib)" "vcfannotategenotypes (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcfannotategenotypes\f[R]
.SH SYNOPSIS
.PP
\f[B]vcfannotategenotypes\f[R]
.SH DESCRIPTION
.PP
Examine genotype correspondence.
Annotate genotypes in the first file with genotypes in the second adding
the genotype as another flag to each sample filed in the first file.
annotation-tag is the name of the sample flag which is added to store
the annotation.
also adds a `has_variant' flag for sites where the second file has a
variant.
.SH OPTIONS
.IP
.nf
\f[C]

Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.