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.TH "VCF2FASTA" "1" "" "vcf2fasta (vcflib)" "vcf2fasta (VCF transformation)"
.hy
.SH NAME
.PP
\f[B]vcf2fasta\f[R]
.SH SYNOPSIS
.PP
\f[B]vcf2fasta\f[R] options [file]
.SH DESCRIPTION
.PP
Generates sample_seq:N.fa for each sample, reference sequence, and
chromosomal copy N in [0,1\&... ploidy].
Each sequence in the fasta file is named using the same pattern used for
the file name, allowing them to be combined.
.SH OPTIONS
.IP
.nf
\f[C]

options:
    -f, --reference REF     Use this reference when decomposing samples.
    -p, --prefix PREFIX     Affix this output prefix to each file, none by default
    -P, --default-ploidy N  Set a default ploidy for samples which do not have
                            information in the first record (2).
    -n VAL                  Set string value to output for missing calls

Type: transformation
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.