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.TH "PERMUTEGPAT++" "1" "" "permuteGPAT++ (vcflib)" "permuteGPAT++ (VCF phenotype)"
.hy
.SH NAME
.PP
\f[B]permuteGPAT++\f[R]
.SH SYNOPSIS
.PP
\f[B]permuteGPAT++\f[R] -f gpat.txt -n 5 -s 1
.SH DESCRIPTION
.PP
\f[B]permuteGPAT++\f[R] is a method for adding empirical p-values to a
GPAT++ score.
.SH OPTIONS
.IP
.nf
\f[C]

     Currently **permuteGPAT++** only supports wcFst, but will be extended.    

OUTPUT: **permuteGPAT++** will append three additional columns:
        1. The number of successes                         
        2. The number of trials                            
        3. The empirical p-value                           

file:    f   -- argument: the input file     
number:  n   -- argument: the number of permutations to run for each value [1000]
success: s   -- argument: stop permutations after \[aq]s\[aq] successes [1]

Type: phenotype
\f[R]
.fi
.SH EXIT VALUES
.TP
\f[B]0\f[R]
Success
.TP
\f[B]not 0\f[R]
Failure
.SH SEE ALSO
.PP
\f[B]vcflib\f[R](1)
.SH OTHER
.SH LICENSE
.PP
Copyright 2011-2023 (C) Erik Garrison and vcflib contributors.
MIT licensed.
.SH AUTHORS
Erik Garrison and vcflib contributors.