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.IX Title "Bio::DB::SoapEUtilities::GQueryAdaptor 3pm"
.TH Bio::DB::SoapEUtilities::GQueryAdaptor 3pm 2024-03-12 "perl v5.38.2" "User Contributed Perl Documentation"
.\" For nroff, turn off justification.  Always turn off hyphenation; it makes
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.SH NAME
Bio::DB::SoapEUtilities::GQueryAdaptor \- Handle for Entrez SOAP GlobalQuery items
.SH SYNOPSIS
.IX Header "SYNOPSIS"
.Vb 10
\& my $fac = Bio::DB::SoapEUtilities\->new();
\& # run a query, returning a GQueryAdaptor
\& my $queries = $fac\->egquery( \-term => \*(AqBRCA and human\*(Aq )\->run(\-auto_adapt=>1);
\& # all databases with hits
\& my @dbs = $queries\->found_in_dbs;
\& # queries by database
\& my $prot_count = $queries\->query_by_db(\*(Aqprot\*(Aq)\->count;
\& # iterate over gquery
\& while ( my $q = $queries\->next_query ) {
\&    my $db = $q\->db;
\&    my $count = $q\->count;
\&    my $status = $q\->status;
\& }
.Ve
.SH DESCRIPTION
.IX Header "DESCRIPTION"
This adaptor provides an iterator (\f(CWnext_query()\fR) and other
convenience functions for parsing NCBI Entrez EUtility \f(CW\*(C`egquery\*(C'\fR
SOAP results.
.SH "SEE ALSO"
.IX Header "SEE ALSO"
Bio::DB::SoapEUtilities
.SH FEEDBACK
.IX Header "FEEDBACK"
.SS "Mailing Lists"
.IX Subsection "Mailing Lists"
User feedback is an integral part of the evolution of this and other
Bioperl modules. Send your comments and suggestions preferably to
the Bioperl mailing list.  Your participation is much appreciated.
.PP
.Vb 2
\&  bioperl\-l@bioperl.org                  \- General discussion
\&http://bioperl.org/wiki/Mailing_lists  \- About the mailing lists
.Ve
.SS Support
.IX Subsection "Support"
Please direct usage questions or support issues to the mailing list:
.PP
bioperl\-l@bioperl.org
.PP
rather than to the module maintainer directly. Many experienced and
reponsive experts will be able look at the problem and quickly
address it. Please include a thorough description of the problem
with code and data examples if at all possible.
.SS "Reporting Bugs"
.IX Subsection "Reporting Bugs"
Report bugs to the Bioperl bug tracking system to help us keep track
of the bugs and their resolution. Bug reports can be submitted via
the web:
.PP
.Vb 1
\&  http://redmine.open\-bio.org/projects/bioperl/
.Ve
.SH "AUTHOR \- Mark A. Jensen"
.IX Header "AUTHOR - Mark A. Jensen"
Email maj \-at\- fortinbras \-dot\- us
.SH APPENDIX
.IX Header "APPENDIX"
The rest of the documentation details each of the object methods.
Internal methods are usually preceded with a _
.SS new
.IX Subsection "new"
.Vb 5
\& Title   : new
\& Usage   : my $obj = new Bio::DB::SoapEUtilities::GQueryAdaptor();
\& Function: Builds a new Bio::DB::SoapEUtilities::GQueryAdaptor object
\& Returns : an instance of Bio::DB::SoapEUtilities::GQueryAdaptor
\& Args    :
.Ve
.SS \fBnext_query()\fP
.IX Subsection "next_query()"
.Vb 5
\& Title   : next_query
\& Usage   : 
\& Function: return the next global query from the attached Result
\& Returns : 
\& Args    :
.Ve
.SS \fBfound_in_dbs()\fP
.IX Subsection "found_in_dbs()"
.Vb 6
\& Title   : found_in_dbs
\& Usage   : 
\& Function: Return list of db names containing hits for 
\&           the query term
\& Returns : array of scalar strings
\& Args    : none
.Ve
.SS \fBquery_by_db()\fP
.IX Subsection "query_by_db()"
.Vb 5
\& Title   : query_by_db
\& Usage   : 
\& Function: get gquery object by db name
\& Returns : 
\& Args    : db name (scalar string)
.Ve