.\" Automatically generated by Pod::Man 4.14 (Pod::Simple 3.40) .\" .\" Standard preamble: .\" ======================================================================== .de Sp \" Vertical space (when we can't use .PP) .if t .sp .5v .if n .sp .. .de Vb \" Begin verbatim text .ft CW .nf .ne \\$1 .. .de Ve \" End verbatim text .ft R .fi .. .\" Set up some character translations and predefined strings. \*(-- will .\" give an unbreakable dash, \*(PI will give pi, \*(L" will give a left .\" double quote, and \*(R" will give a right double quote. \*(C+ will .\" give a nicer C++. Capital omega is used to do unbreakable dashes and .\" therefore won't be available. \*(C` and \*(C' expand to `' in nroff, .\" nothing in troff, for use with C<>. .tr \(*W- .ds C+ C\v'-.1v'\h'-1p'\s-2+\h'-1p'+\s0\v'.1v'\h'-1p' .ie n \{\ . ds -- \(*W- . ds PI pi . if (\n(.H=4u)&(1m=24u) .ds -- \(*W\h'-12u'\(*W\h'-12u'-\" diablo 10 pitch . if (\n(.H=4u)&(1m=20u) .ds -- \(*W\h'-12u'\(*W\h'-8u'-\" diablo 12 pitch . ds L" "" . ds R" "" . ds C` "" . ds C' "" 'br\} .el\{\ . ds -- \|\(em\| . ds PI \(*p . ds L" `` . ds R" '' . ds C` . ds C' 'br\} .\" .\" Escape single quotes in literal strings from groff's Unicode transform. .ie \n(.g .ds Aq \(aq .el .ds Aq ' .\" .\" If the F register is >0, we'll generate index entries on stderr for .\" titles (.TH), headers (.SH), subsections (.SS), items (.Ip), and index .\" entries marked with X<> in POD. Of course, you'll have to process the .\" output yourself in some meaningful fashion. .\" .\" Avoid warning from groff about undefined register 'F'. .de IX .. .nr rF 0 .if \n(.g .if rF .nr rF 1 .if (\n(rF:(\n(.g==0)) \{\ . if \nF \{\ . de IX . tm Index:\\$1\t\\n%\t"\\$2" .. . if !\nF==2 \{\ . nr % 0 . nr F 2 . \} . \} .\} .rr rF .\" ======================================================================== .\" .IX Title "Bio::Factory::DriverFactory 3pm" .TH Bio::Factory::DriverFactory 3pm "2021-08-15" "perl v5.32.1" "User Contributed Perl Documentation" .\" For nroff, turn off justification. Always turn off hyphenation; it makes .\" way too many mistakes in technical documents. .if n .ad l .nh .SH "NAME" Bio::Factory::DriverFactory \- Base class for factory classes loading drivers .SH "SYNOPSIS" .IX Header "SYNOPSIS" .Vb 1 \& #this class is not instantiable .Ve .SH "DESCRIPTION" .IX Header "DESCRIPTION" This a base class for factory classes that load drivers. Normally, you don't instantiate this class directly. .SH "FEEDBACK" .IX Header "FEEDBACK" .SS "Mailing Lists" .IX Subsection "Mailing Lists" User feedback is an integral part of the evolution of this and other Bioperl modules. Send your comments and suggestions preferably to one of the Bioperl mailing lists. Your participation is much appreciated. .PP .Vb 2 \& bioperl\-l@bioperl.org \- General discussion \& http://bioperl.org/wiki/Mailing_lists \- About the mailing lists .Ve .SS "Support" .IX Subsection "Support" Please direct usage questions or support issues to the mailing list: .PP \&\fIbioperl\-l@bioperl.org\fR .PP rather than to the module maintainer directly. Many experienced and reponsive experts will be able look at the problem and quickly address it. Please include a thorough description of the problem with code and data examples if at all possible. .SS "Reporting Bugs" .IX Subsection "Reporting Bugs" Report bugs to the Bioperl bug tracking system to help us keep track the bugs and their resolution. Bug reports can be submitted via the web: .PP .Vb 1 \& https://github.com/bioperl/bioperl\-live/issues .Ve .SH "AUTHOR \- Jason Stajich" .IX Header "AUTHOR - Jason Stajich" Email Jason Stajich .SH "APPENDIX" .IX Header "APPENDIX" The rest of the documentation details each of the object methods. Internal methods are usually preceded with a _ .SS "register_driver" .IX Subsection "register_driver" .Vb 3 \& Title : register_driver \& Usage : $factory\->register_driver("genscan", "Bio::Tools::Genscan"); \& Function: Registers a driver a factory class should be able to instantiate. \& \& This method can be called both as an instance and as a class \& method. \& \& Returns : \& Args : Key of the driver (string) and the module implementing the driver \& (string). .Ve .SS "driver_table" .IX Subsection "driver_table" .Vb 4 \& Title : driver_table \& Usage : $table = $factory\->driver_table(); \& Function: Returns a reference to the hash table storing associations of \& methods with drivers. \& \& You use this table to look up registered methods (keys) and \& drivers (values). \& \& In this implementation the table is class\-specific and therefore \& shared by all instances. You can override this in a derived class, \& but note that this method can be called both as an instance and a \& class method. \& \& This will be the table used by the object internally. You should \& definitely know what you\*(Aqre doing if you modify the table\*(Aqs \& contents. Modifications are shared by _all_ instances, those present \& and those yet to be created. \& \& Returns : A reference to a hash table. \& Args : .Ve .SS "get_driver" .IX Subsection "get_driver" .Vb 7 \& Title : get_driver \& Usage : $module = $factory\->get_driver("genscan"); \& Function: Returns the module implementing a driver registered under the \& given key. \& Example : \& Returns : A string. \& Args : Key of the driver (string). .Ve .SS "_load_module" .IX Subsection "_load_module" .Vb 6 \& Title : _load_module \& Usage : $self\->_load_module("Bio::Tools::Genscan"); \& Function: Loads up (like use) a module at run time on demand. \& Example : \& Returns : TRUE on success \& Args : .Ve