.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH MAF-CUT "1" "February 2024" "maf-cut 1542" "User Commands"
.SH NAME
maf-cut \- manual page for maf-cut 1542
.SH DESCRIPTION
usage: maf\-cut [\-h] segment [alignments] [sequences ...]
.PP
Get parts of MAF\-format alignments.
.SS "positional arguments:"
.TP
segment
zero\-based sequence range, e.g. chr7:123400\-123500
.TP
alignments
file of sequence alignments in MAF format
.TP
sequences
file of sequences in fasta or fastq format
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit