'\" t
.\"     Title: kmc_tools-sort
.\"    Author: [see the "AUTHOR(S)" section]
.\" Generator: Asciidoctor 2.0.20
.\"      Date: 
.\"    Manual: \ \&
.\"    Source: \ \&
.\"  Language: English
.\"
.TH "KMC_TOOLS\-SORT" "1" "" "\ \&" "\ \&"
.ie \n(.g .ds Aq \(aq
.el       .ds Aq '
.ss \n[.ss] 0
.nh
.ad l
.de URL
\fI\\$2\fP <\\$1>\\$3
..
.als MTO URL
.if \n[.g] \{\
.  mso www.tmac
.  am URL
.    ad l
.  .
.  am MTO
.    ad l
.  .
.  LINKSTYLE blue R < >
.\}
.SH "NAME"
kmc_tools-sort \- sort KMC databases
.SH "SYNOPSIS"
.sp
\fBkmc_tools sort\fP <inputdb> [input_params] <output> [output_params]
.SH "DESCRIPTION"
.sp
Converts database produced by KMC2.x to KMC1.x database format (which contains k\-mers in sorted order)
.SH "OPTIONS"
.sp
For each input there are additional parameters:
.sp
\fB\-ci<value>\fP
.RS 4
exclude k\-mers occurring less than <value> times
.RE
.sp
\fB\-cx<value>\fP
.RS 4
exclude k\-mers occurring more of than <value> times
.RE
.sp
For output there are additional parameters:
.sp
\fB\-cs<value>\fP
.RS 4
maximal value of a counter
.RE
.SH "EXAMPLE"
.sp
.if n .RS 4
.nf
.fam C
kmc_tools sort wy_kmc2 \-ci3 \-cx1000 wy_kmc1 \-cs255
.fam
.fi
.if n .RE
.SH "AUTHOR"
.sp
KMC was originally written by:
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Sebastian Deorowicz (\c
.MTO "sebastian.deorowicz\(atpolsl.pl" "" ")"
.RE
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Marek Kokot
.RE
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Szymon Grabowski
.RE
.sp
.RS 4
.ie n \{\
\h'-04'\(bu\h'+03'\c
.\}
.el \{\
.  sp -1
.  IP \(bu 2.3
.\}
Agnieszka Debudaj\-Grabysz
.RE
.SH "COPYING"
.sp
KMC is a free software distributed under GNU GPL3 licence for academic,
research, and commercial use.