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.TH "HINGE" "1" "October 2016" "" ""
.hy
.SH NAME
.PP
hinge - assembler for long-read sequencing data
.SH SYNOPSIS
.PP
\f[B]hinge\f[R] {\f[B]subcommand\f[R]} \f[I]options\f[R] \f[I]files\f[R]
.SH OPTIONS
.PP
Subcommands are described below.
Run each subcommand without arguments for usage information.
.TP
\f[B]filter\f[R]
filter out short reads and long chimeric reads.
.TP
\f[B]maximal\f[R]
get maximal reads.
.TP
\f[B]layout\f[R]
generate a layout for assembly
.TP
\f[B]clip\f[R]
prune and clip output of the \f[B]layout\f[R] command
.TP
\f[B]draft-path\f[R]
get assembly graph as list of nodes
.TP
\f[B]draft\f[R]
construct draft assembly
.TP
\f[B]correct-head\f[R]
convert fasta file to daligner-specific format
.TP
\f[B]consensus\f[R]
construct consensus sequence
.TP
\f[B]gfa\f[R]
Create a graphical fragment assembly file from \f[B]consensus\f[R]
output
.PP
\f[B]visualize\f[R], \f[B]visualise\f[R]