'\" t .\" Title: gt-sketch .\" Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author] .\" Generator: DocBook XSL Stylesheets vsnapshot .\" Date: 02/28/2024 .\" Manual: GenomeTools Manual .\" Source: GenomeTools 1.6.5 .\" Language: English .\" .TH "GT\-SKETCH" "1" "02/28/2024" "GenomeTools 1\&.6\&.5" "GenomeTools Manual" .\" ----------------------------------------------------------------- .\" * Define some portability stuff .\" ----------------------------------------------------------------- .\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .\" http://bugs.debian.org/507673 .\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html .\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .ie \n(.g .ds Aq \(aq .el .ds Aq ' .\" ----------------------------------------------------------------- .\" * set default formatting .\" ----------------------------------------------------------------- .\" disable hyphenation .nh .\" disable justification (adjust text to left margin only) .ad l .\" ----------------------------------------------------------------- .\" * MAIN CONTENT STARTS HERE * .\" ----------------------------------------------------------------- .SH "NAME" gt-sketch \- Create graphical representation of GFF3 annotation files\&. .SH "SYNOPSIS" .sp \fBgt sketch\fR [option \&...] image_file [GFF3_file \&...] .SH "DESCRIPTION" .PP \fB\-pipe\fR [\fIyes|no\fR] .RS 4 use pipe mode (i\&.e\&., show all gff3 features on stdout) (default: no) .RE .PP \fB\-flattenfiles\fR [\fIyes|no\fR] .RS 4 do not group tracks by source file name and remove file names from track description (default: no) .RE .PP \fB\-seqid\fR [\fIstring\fR] .RS 4 sequence region identifier default: first one in file .RE .PP \fB\-start\fR [\fIvalue\fR] .RS 4 start position default: first region start .RE .PP \fB\-end\fR [\fIvalue\fR] .RS 4 end position default: last region end .RE .PP \fB\-width\fR [\fIvalue\fR] .RS 4 target image width (in pixel) (default: 800) .RE .PP \fB\-style\fR [\fIstring\fR] .RS 4 style file to use (default: undefined) .RE .PP \fB\-format\fR [\fI\&...\fR] .RS 4 output graphics format choose from png|pdf|svg|ps (default: png) .RE .PP \fB\-input\fR [\fI\&...\fR] .RS 4 input data format choose from gff|bed|gtf (default: gff) .RE .PP \fB\-addintrons\fR [\fIyes|no\fR] .RS 4 add intron features between existing exon features (before drawing) (default: no) .RE .PP \fB\-unsafe\fR [\fIyes|no\fR] .RS 4 enable unsafe mode for style file (default: no) .RE .PP \fB\-v\fR [\fIyes|no\fR] .RS 4 be verbose (default: no) .RE .PP \fB\-force\fR [\fIyes|no\fR] .RS 4 force writing to output file (default: no) .RE .PP \fB\-help\fR .RS 4 display help and exit .RE .PP \fB\-version\fR .RS 4 display version information and exit .RE .SH "REPORTING BUGS" .sp Report bugs to https://github\&.com/genometools/genometools/issues\&.