'\" t
.\"     Title: gt-congruence-spacedseed
.\"    Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author]
.\" Generator: DocBook XSL Stylesheets vsnapshot <http://docbook.sf.net/>
.\"      Date: 02/28/2024
.\"    Manual: GenomeTools Manual
.\"    Source: GenomeTools 1.6.5
.\"  Language: English
.\"
.TH "GT\-CONGRUENCE\-SPAC" "1" "02/28/2024" "GenomeTools 1\&.6\&.5" "GenomeTools Manual"
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.SH "NAME"
gt-congruence-spacedseed \- Match spaced seeds\&.
.SH "SYNOPSIS"
.sp
\fBgt congruence spacedseed\fR [options]
.SH "DESCRIPTION"
.PP
\fB\-esa\fR [\fIstring\fR]
.RS 4
Specify index (enhanced suffix array) (default: undefined)
.RE
.PP
\fB\-pck\fR [\fIstring\fR]
.RS 4
Specify index (packed index) (default: undefined)
.RE
.PP
\fB\-q\fR
.RS 4
Specify files containing the query sequences
.RE
.PP
\fB\-v\fR [\fIyes|no\fR]
.RS 4
be verbose (default: no)
.RE
.PP
\fB\-help\fR
.RS 4
display help and exit
.RE
.PP
\fB\-version\fR
.RS 4
display version information and exit
.RE
.SH "REPORTING BUGS"
.sp
Report bugs to <kurtz@zbh\&.uni\-hamburg\&.de>\&.