'\" t .\" Title: gt-bed_to_gff3 .\" Author: [FIXME: author] [see http://www.docbook.org/tdg5/en/html/author] .\" Generator: DocBook XSL Stylesheets vsnapshot .\" Date: 02/28/2024 .\" Manual: GenomeTools Manual .\" Source: GenomeTools 1.6.5 .\" Language: English .\" .TH "GT\-BED_TO_GFF3" "1" "02/28/2024" "GenomeTools 1\&.6\&.5" "GenomeTools Manual" .\" ----------------------------------------------------------------- .\" * Define some portability stuff .\" ----------------------------------------------------------------- .\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .\" http://bugs.debian.org/507673 .\" http://lists.gnu.org/archive/html/groff/2009-02/msg00013.html .\" ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ .ie \n(.g .ds Aq \(aq .el .ds Aq ' .\" ----------------------------------------------------------------- .\" * set default formatting .\" ----------------------------------------------------------------- .\" disable hyphenation .nh .\" disable justification (adjust text to left margin only) .ad l .\" ----------------------------------------------------------------- .\" * MAIN CONTENT STARTS HERE * .\" ----------------------------------------------------------------- .SH "NAME" gt-bed_to_gff3 \- Parse BED file and convert it to GFF3\&. .SH "SYNOPSIS" .sp \fBgt bed_to_gff3\fR [BED_file] .SH "DESCRIPTION" .PP \fB\-featuretype\fR [\fIstring\fR] .RS 4 Set type of parsed BED features (default: BED_feature) .RE .PP \fB\-thicktype\fR [\fIstring\fR] .RS 4 Set type of parsed thick BED features (default: BED_thick_feature) .RE .PP \fB\-blocktype\fR [\fIstring\fR] .RS 4 Set type of parsed BED blocks (default: BED_block) .RE .PP \fB\-o\fR [\fIfilename\fR] .RS 4 redirect output to specified file (default: undefined) .RE .PP \fB\-gzip\fR [\fIyes|no\fR] .RS 4 write gzip compressed output file (default: no) .RE .PP \fB\-bzip2\fR [\fIyes|no\fR] .RS 4 write bzip2 compressed output file (default: no) .RE .PP \fB\-force\fR [\fIyes|no\fR] .RS 4 force writing to output file (default: no) .RE .PP \fB\-help\fR .RS 4 display help and exit .RE .PP \fB\-version\fR .RS 4 display version information and exit .RE .SH "REPORTING BUGS" .sp Report bugs to https://github\&.com/genometools/genometools/issues\&.