.\" DO NOT MODIFY THIS FILE!  It was generated by help2man 1.49.3.
.TH FASTAQ-TO_FASTA "1" "December 2023" "fastaq_to_fasta 3.17.0" "User Commands"
.SH NAME
fastaq_to_fasta \- Converts a variety of input formats to nicely formatted FASTA format
.SH DESCRIPTION
usage: fastaq_to_fasta [options] <infile> <outfile>
.PP
Converts a variety of input formats to nicely formatted FASTA format
.SS "positional arguments:"
.TP
infile
Name of input file. Can be any of FASTA, FASTQ, GFF3,
EMBL, GBK, Phylip
.TP
outfile
Name of output file
.SS "options:"
.TP
\fB\-h\fR, \fB\-\-help\fR
show this help message and exit
.TP
\fB\-l\fR LINE_LENGTH, \fB\-\-line_length\fR LINE_LENGTH
Number of bases on each sequence line of output file.
Set to zero for no linebreaks in sequences [60]
.TP
\fB\-s\fR, \fB\-\-strip_after_whitespace\fR
Remove everything after first whitespace in every
sequence name
.TP
\fB\-u\fR, \fB\-\-check_unique\fR
Die if any of the output sequence names are not unique