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FASTAQ-SPLIT_BY_BASE_COUNT(1) User Commands FASTAQ-SPLIT_BY_BASE_COUNT(1)

NAME

fastaq_split_by_base_count - Split multi sequence file into separate files

DESCRIPTION

usage: fastaq_split_by_base_count [options] <infile> <outprefix> <max_bases>

Splits a multi sequence file into separate files. Does not split sequences. Puts up to max_bases into each split file. The exception is that any sequence longer than max_bases is put into its own file.

positional arguments:

infile
Name of input file to be split
outprefix
Name of output file
max_bases
Max bases in each output split file

optional arguments:

-h, --help
show this help message and exit
--max_seqs INT
Max number of sequences in each output split file [no limit]
April 2020 fastaq 3.17.0