WORDMATCH(1e) | EMBOSS Manual for Debian | WORDMATCH(1e) |
NAME¶
wordmatch - Finds regions of identity (exact matches) of two sequences
SYNOPSIS¶
wordmatch -asequence seqset -bsequence seqall -wordsize integer [-dumpalign toggle] -outfile align [-logfile outfile] [-dumpfeat toggle] -aoutfeat featout -boutfeat featout
wordmatch -help
DESCRIPTION¶
wordmatch is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Local" command group(s).
OPTIONS¶
Input section¶
-asequence seqset
-bsequence seqall
Required section¶
-wordsize integer
Output section¶
-dumpalign toggle
-outfile align
-logfile outfile
-dumpfeat toggle
-aoutfeat featout
-boutfeat featout
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO¶
wordmatch is fully documented via the tfm(1) system.
AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |