WORDFINDER(1e) | EMBOSS Manual for Debian | WORDFINDER(1e) |
NAME¶
wordfinder - Match large sequences against one or more other sequences
SYNOPSIS¶
wordfinder -asequence seqset -bsequence seqall [-datafile matrixf] -gapopen float -gapextend float [-width integer] [-wordlen integer] [-limitmatch integer] [-limitalign integer] [-lowmatch integer] [-lowalign integer] -outfile align [-errorfile outfile]
wordfinder -help
DESCRIPTION¶
wordfinder is a command line program from EMBOSS (“the European Molecular Biology Open Software Suite”). It is part of the "Alignment:Local" command group(s).
OPTIONS¶
Input section¶
-asequence seqset
-bsequence seqall
-datafile matrixf
Required section¶
-gapopen float
-gapextend float
Additional section¶
-width integer
-wordlen integer
-limitmatch integer
-limitalign integer
-lowmatch integer
-lowalign integer
Output section¶
-outfile align
-errorfile outfile
BUGS¶
Bugs can be reported to the Debian Bug Tracking system (http://bugs.debian.org/emboss), or directly to the EMBOSS developers (http://sourceforge.net/tracker/?group_id=93650&atid=605031).
SEE ALSO¶
wordfinder is fully documented via the tfm(1) system.
AUTHOR¶
Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
COPYRIGHT¶
This manual page was autogenerated from an Ajax Control Definition of the EMBOSS package. It can be redistributed under the same terms as EMBOSS itself.
05/11/2012 | EMBOSS 6.4.0 |