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DENSITY-SCORE-BY-RESIDUE(1) | General Commands Manual | DENSITY-SCORE-BY-RESIDUE(1) |
NAME¶
density-score-by-residue - program to...
SYNOPSIS¶
density-score-by-residue
DESCRIPTION¶
density-score-by-residue is a part of the Coot suite of programs.
OPTIONS¶
These programs follow the usual GNU command line syntax, with long options starting with two dashes (-). A summary of options is included below.
- --pdbin=file
- Input PDB file name
- --hklin=file
- MTZ file containing structure factors
- --f=label
- label of MTZ file column containing structure factor amplitudes
- --phi=label
- label of MTZ file column containing structure factor phases
- --weight=label
- Label of weight column in MTZ file
- --score-atoms
- --cut
- cut out badly scoring residues
- --cut-level=level
- Set (absolute) density level below which we can cut out residues
- --pdbout=file
- Output PDB file name
SEE ALSO¶
bfactan(1), coot(1), findligand(1), findwaters(1), fix-nomenclature-errors(1), lidia(1).
AUTHOR¶
density-score-by-residue is written by Paul Emsley.
This manual page was written by Morten Kjeldgaard <mok@bioxray.dk>
January, 2011 |