.TH COD_PREDEPOSITION_CHECK 1
.SH NAME
cod_predeposition_check \- filter and check pairs of CIF and Fobs files for suitability for deposition to COD database.

.SH SYNOPSIS
cod_predeposition_check \-\-options input.cif input*.cif

.SH DESCRIPTION
Filter and check pairs of CIF and Fobs files for suitability for
deposition to COD database.

.SH OPTIONS
\-d, \-\-database  cod
                  Use database "cod" to query for structures.


\-h, \-\-host   www.crystallography.net

\-s, \-\-server www.crystallography.net
                  Query COD database on the host 'www.crystallography.net'.


\-l, \-\-localhost
                  Use database server on the localhost to query the COD
                  database.


\-p, \-\-port 3306
                  Use use the specified port (default 3306) to query
                  structures.


\-t, \-\-table  data
                  Use SQL table 'data' to query for structures.


\-u, \-\-user cod_reader
                  Use user name 'cod_reader' to access COD database;
                  this reader should be granted SELECT privilege, i.e.
                  should be able to read the COD database, without
                  supplying a password.


\-\-password
                  Use the specified password (default empty) to connect.


\-\-platform 'SQLite'
                  Use the SQL database platform 'SQLite' to query
                  structures (default 'mysql').


\-\-cif input1.cif
                  Specify a CIF file to be deposited. Multiple CIF files
                  can be provided in a way like this:
                  cod_predeposition_check \-\-cif input1.cif \-\-cif input2.cif


\-\-hkl, \-\-fobs input1.hkl
                  Specify a Fobs file to be deposited. Multiple Fobs files
                  can be provided in way like this:
                  cod_predeposition_check \-\-hkl input1.hkl \-\-hkl input2.hkl
                  The order of the files is important in order to pair CIF
                  and Fobs files correctly.


\-\-type, \-\-deposition\-type 'prepublication'
                  Specify the deposition type under which the structure
                  is to be deposited (default 'published').


\-\-author\-name 'Doe, J.'
                  Use the specified name as the name of the person
                  depositing the files.


\-\-journal 'The Journal'
                  Use the specified journal name as if it was supplied
                  by the depositor during the 'prepublication' type
                  deposition.


\-\-hold\-period 3
                  Use the specified hold period as if it was supplied by
                  the depositor.


\-\-replace
                  Treat given files as replacements for previously
                  deposited data.

\-\-no\-replace, \-\-dont\-replace
                  Do not treat given files as replacements for previously
                  deposited data (default).


\-\-release
                  Treat given files as if they were previously deposited
                  as prepublication material and should now be released
                  into the public domain.

\-\-no\-release, \-\-dont\-release
                  Do not treat given files as if they were previously
                  deposited as prepublication material and should now
                  be released into the public domain (default).


\-\-bypass\-checks
                  Do not check CIF files for compliance with COD
                  requirements.

\-\-dont\-bypass\-checks, \-\-no\-bypass\-checks
                  Check CIF files for compliance with COD requirements
                  (default).


\-\-split\-pdcif
                  Output powder diffraction data blocks as a HKL file.

\-\-dont\-split\-pdcif, \-\-no\-split\-pdcif
                  Output powder diffraction data blocks as part of the
                  CIF file (default).


\-\-print\-timestamps
                  Print timestamps to STDOUT at the start and end of
                  each CIF file deposition.

\-\-no\-print\-timestamps, \-\-dont\-print\-timestamps
                  Do not print timestamps to STDOUT at the start and end
                  of each CIF file deposition (default)


\-\-tmp\-dir, \-\-temp\-dir
                  Use the specified temporary directory (default './').


\-\-use\-perl\-parser
                  Use Perl parser to parse CIF files.

\-\-use\-c\-parser
                  Use C parser to parse CIF files (default).


\-\-help, \-\-usage
                  Output a short usage message (this message) and exit.

\-\-version
                  Output version information and exit.

.SH "REPORTING BUGS"
Report cod_predeposition_check bugs using e\-mail: cod\-bugs@ibt.lt